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Mechanism of proton-coupled electron transfer described with QM/MM implementation of coupled-perturbed density-functional tight-binding

  • Denis Maag
  • , Josua Böser
  • , Henryk A. Witek
  • , Ben Hourahine
  • , Marcus Elstner
  • , Tomáš Kubař

Research output: Contribution to journal › Article › peer-review

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Abstract

Coupled-perturbed equations for degenerate orbitals were implemented for third order density-functional tight binding, which allowed the use of Mulliken charges as reaction coordinates. The method was applied to proton-coupled electron transfer (PCET) reactions in a model system and thoroughly tested for QM and QM/MM setups (i.e., coupled quantum and molecular mechanics). The performed enhanced sampling simulations were stable, and the obtained potentials of the mean force were able to address the thermodynamic and kinetic features of the reactions by showing the expected topography and energy barriers. Hence, this method has the potential to distinguish between concerted and sequential mechanisms and could next be applied to proton-coupled electron transfer reactions in more complex systems like proteins.

Original languageEnglish
Article number124107
Number of pages13
JournalJournal of Chemical Physics
Volume158
Issue number12
Early online date2 Mar 2023
DOIs
Publication statusPublished - 22 Mar 2023

Funding

This work was supported by the German Science Foundation (DFG) under Project No. GRK 2450 (Tailored Scale-Bridging Approaches to Computational Nanoscience), the state of Baden-Württemberg through bwHPC, the DFG through Project No. INST 40/575-1 FUGG (JUSTUS 2 cluster), the National Science and Technology Council, Taiwan (Grant Nos MOST108-2113-M-009-010-MY3 and NSTC111-2113-M-A49-017), and the Center for Emergent Functional Matter Science of National Yang Ming Chiao Tung University from The Featured Areas Research Center Program within the framework of the Higher Education Sprout Project by the Ministry of Education (MOE) in Taiwan.

Keywords

  • quantum and molecular mechanics
  • DFTB
  • DFTB+
  • tyrosine
  • gas phase and in solvent

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