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Abstract
We propose a fast and efficient method to compute molecular descriptors based on the Integral Equation Theory (IET) of Molecular Liquids. The new RISM-MOL-INF descriptors are obtained from solute-solvent correlation functions computed by the 1D Reference Interaction Site Model (RISM). The RISM-MOL-INF descriptors are conceptually different from those commonly used in chemical informatics, since they fingerprint solutes by the change they induce in solvent density distribution, rather than by the solute molecular structure alone. It is shown that key solvation thermodynamic and ADME properties can be predicted accurately using machine learning algorithms trained on RISM-MOL-INF descriptors only. Since they can be evaluated in a matter of minutes for most small organic and druglike molecules, the RISM-MOL-INF descriptors are suitable for medium to high-throughput in silico screening in applications such as pharmaceutical research and development. Due to the importance of solvation and desolvation effects in biological systems, we believe that the RISM-MOL-INF descriptors will find many applications in biophysical and biomedical property prediction.
| Original language | English |
|---|---|
| Publication status | Published - 10 Aug 2014 |
| Event | 248th ACS National Meeting & Exposition - California, San Francisco, United Kingdom Duration: 10 Aug 2014 → 14 Aug 2014 http://www.acs.org/content/acs/en/meetings/fall-2014.html |
Conference
| Conference | 248th ACS National Meeting & Exposition |
|---|---|
| Country/Territory | United Kingdom |
| City | San Francisco |
| Period | 10/08/14 → 14/08/14 |
| Internet address |
Keywords
- integral equation theory
- RISM
- reference interaction site model
- data mining
- cheminformatics
- support vector machine
- random forest
- solubility
- ADMET
- drug discovery
- hydration free energy
- caco-2
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Dive into the research topics of 'Is there a role for the integral equation theory of molecular liquids in chemical informatics?'. Together they form a unique fingerprint.Activities
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248th ACS National Meeting & Exposition
Palmer, D. (Speaker)
10 Aug 2014 → 14 Aug 2014Activity: Presenting or Organising an Event › Participation in conference