Insights into the behaviour of systems biology models from dynamic sensitivity and identifiability analysis: a case study of an NF-kB signaling pathway

Hong Yue, Martin Brown, Joshua Knowles, Hong Wang, David S. Broomhead, Douglas B. Kell

Research output: Contribution to journalArticle

115 Citations (Scopus)
135 Downloads (Pure)

Abstract

Mathematical modelling offers a variety of useful techniques to help in understanding the intrinsic behaviour of complex signal transduction networks. From the system engineering point of view, the dynamics of metabolic and signal transduction models can always be described by nonlinear ordinary differential equations (ODEs) following mass balance principles. Based on the state-space formulation, many methods from the area of automatic control can conveniently be applied to the modelling, analysis and design of cell networks. In the present study, dynamic sensitivity analysis is performed on a model of the IB-NF-B signal pathway system. Univariate analysis of the Euclidean-form overall sensitivities shows that only 8 out of the 64 parameters in the model have major influence on the nuclear NF-B oscillations. The sensitivity matrix is then used to address correlation analysis, identifiability assessment and measurement set selection within the framework of least squares estimation and multivariate analysis. It is shown that certain pairs of parameters are exactly or highly correlated to each other in terms of their effects on the measured variables. The experimental design strategy provides guidance on which proteins should best be considered for measurement such that the unknown parameters can be estimated with the best statistical precision. The whole analysis scheme we describe provides efficient parameter estimation techniques for complex cell networks.
Original languageEnglish
Pages (from-to)640-649
Number of pages10
JournalMolecular BioSystems
Volume2
Issue number12
DOIs
Publication statusPublished - 2006

Fingerprint

Systems Biology
NF-kappa B
Signal Transduction
Least-Squares Analysis
Research Design
Multivariate Analysis
Proteins

Keywords

  • molecular biosystems
  • molecular biology
  • system engineering
  • electrical engineering

Cite this

Yue, Hong ; Brown, Martin ; Knowles, Joshua ; Wang, Hong ; Broomhead, David S. ; Kell, Douglas B. / Insights into the behaviour of systems biology models from dynamic sensitivity and identifiability analysis: a case study of an NF-kB signaling pathway. In: Molecular BioSystems. 2006 ; Vol. 2, No. 12. pp. 640-649.
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Insights into the behaviour of systems biology models from dynamic sensitivity and identifiability analysis: a case study of an NF-kB signaling pathway. / Yue, Hong; Brown, Martin; Knowles, Joshua; Wang, Hong; Broomhead, David S.; Kell, Douglas B.

In: Molecular BioSystems, Vol. 2, No. 12, 2006, p. 640-649.

Research output: Contribution to journalArticle

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AU - Kell, Douglas B.

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