GenomeDiagram: a python package for the visualization of large-scale genomic data

Leighton Pritchard, Jennifer A. White, Paul R.J. Birch, Ian K. Toth

Research output: Contribution to journalArticle

50 Citations (Scopus)

Abstract

Summary: We present GenomeDiagram, a flexible, open-source Python module for the visualization of large-scale genomic, comparative genomic and other data with reference to a single chromosome or other biological sequence. GenomeDiagram may be used to generate publication-quality vector graphics, rastered images and in-line streamed graphics for webpages. The package integrates with datatypes from the BioPython project, and is available for Windows, Linux and Mac OS X systems.

Original languageEnglish
Pages (from-to)616-617
Number of pages2
JournalBioinformatics
Volume22
Issue number5
DOIs
Publication statusPublished - 1 Mar 2006

Keywords

  • Python
  • GenomeDiagram
  • large-scale genomic data

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