find_differential_primers.py v0.1.4: automated discovery of diagnostic PCR or qPCR primers

Leighton Pritchard; Rory McLeod

doi:10.5281/zenodo.3476916

find_differential_primers.py v0.1.4: automated discovery of diagnostic PCR or qPCR primers

Leighton Pritchard (Developer), Rory McLeod (Developer)

Strathclyde Institute Of Pharmacy And Biomedical Sciences

Research output: Digital or non-textual outputs › Software

Abstract

This is intended to be the final stable release of find_differential_primers.py. All development is now being focused on the diagnostic_primers branch, which will be merged into the master branch in due course.

Original language	English
Place of Publication	[San Francisco, CA.]
Media of output	Online
Size	11.2 MB
DOIs	https://doi.org/10.5281/zenodo.3476916
Publication status	Published - 8 Oct 2019

Keywords

bioinformatics
diagnostics
detection
PCR

Access to Document

10.5281/zenodo.3476916Licence: Other

https://github.com/widdowquinn/find_differential_primers/releases/tag/v0.1.4

Intraspecies-Resolution Metabarcoding: automated primer design and a plant pathology case study
Pritchard, L., Humphris, S., Campbell, E., Watts, L., Haynes, E., Pufal, H., Cahill, G., Davey, T., Elphinstone, J. & Toth, I., 6 Apr 2021. 1 p.
Research output: Contribution to conference › Poster

Open Access
File
16 Downloads (Pure)
Detection of phytopathogens of the genus Dickeya using a PCR primer prediction pipeline for draft bacterial genome sequences
Pritchard, L., Humphris, S., Saddler, G. S., Parkinson, N. M., Bertrand, V., Elphinstone, J. G. & Toth, I. K., 30 Jun 2013, In: Plant Pathology. 62, 3, p. 587-596 10 p.
Research output: Contribution to journal › Article › peer-review
82 Link opens in a new tab Citations (Scopus)
Alignment-free design of highly discriminatory diagnostic primer sets for Escherichia coli O104:H4 outbreak strains
Pritchard, L., Holden, N. J., Bielaszewska, M., Karch, H. & Toth, I. K., 5 Apr 2012, In: PLoS ONE. 7, 4, 8 p., e34498.
Research output: Contribution to journal › Article › peer-review

Open Access
File
36 Link opens in a new tab Citations (Scopus)

23 Downloads (Pure)

UK DNA Working Group Conference 2020
Pritchard, L. (Invited speaker)
27 Jan 2020 → 28 Jan 2020
Activity: Presenting or Organising an Event › Participation in conference

Cite this

@misc{624638225f314097a37c0a62faa7062a,

title = "find\_differential\_primers.py v0.1.4: automated discovery of diagnostic PCR or qPCR primers",

abstract = "This is intended to be the final stable release of find\_differential\_primers.py. All development is now being focused on the diagnostic\_primers branch, which will be merged into the master branch in due course.",

keywords = "bioinformatics, diagnostics, detection, PCR",

author = "Leighton Pritchard and Rory McLeod",

year = "2019",

month = oct,

day = "8",

doi = "10.5281/zenodo.3476916",

language = "English",

}

TY - ADVS

T1 - find_differential_primers.py v0.1.4

T2 - automated discovery of diagnostic PCR or qPCR primers

A2 - Pritchard, Leighton

A2 - McLeod, Rory

PY - 2019/10/8

Y1 - 2019/10/8

N2 - This is intended to be the final stable release of find_differential_primers.py. All development is now being focused on the diagnostic_primers branch, which will be merged into the master branch in due course.

AB - This is intended to be the final stable release of find_differential_primers.py. All development is now being focused on the diagnostic_primers branch, which will be merged into the master branch in due course.

KW - bioinformatics

KW - diagnostics

KW - detection

KW - PCR

U2 - 10.5281/zenodo.3476916

DO - 10.5281/zenodo.3476916

M3 - Software

CY - [San Francisco, CA.]

ER -

find_differential_primers.py v0.1.4: automated discovery of diagnostic PCR or qPCR primers

Abstract

Keywords

Access to Document

Fingerprint

Research output

Intraspecies-Resolution Metabarcoding: automated primer design and a plant pathology case study

Detection of phytopathogens of the genus Dickeya using a PCR primer prediction pipeline for draft bacterial genome sequences

Alignment-free design of highly discriminatory diagnostic primer sets for Escherichia coli O104:H4 outbreak strains

Activities

UK DNA Working Group Conference 2020

Cite this