Easily phylotyping E. coli via the EzClermont web app and command-line tool

Nicholas R. Waters, Florence Abram, Fiona Brennan, Ashleigh Holmes, Leighton Pritchard

Research output: Contribution to journalArticlepeer-review

3 Downloads (Pure)

Abstract

The Clermont PCR method of phylotyping Escherichia coli has remained a useful classification scheme despite the proliferation of higher-resolution sequence typing schemes. We have implemented an in silico Clermont PCR method as both a web app and as a command-line tool to allow researchers to easily apply this phylotyping scheme to genome assemblies easily.
Original languageEnglish
Article numberACMI-D-20-00006
JournalAccess Microbiology
Volume2
Issue number9
DOIs
Publication statusPublished - 19 Jun 2020

Keywords

  • Escherichia coli
  • phylotyping
  • geno ics
  • bioinformatics
  • PhD Supervision

    Fiona Brennan (Advisor), Florence Abram (Advisor), Leighton Pritchard (Advisor), Ashleigh Holmes (Advisor) & Nicholas R. Waters (Recipient)

    1 May 201631 May 2020

    Activity: Other activity typesOther

Cite this