Easily phylotyping E. coli via the EzClermont web app and command-line tool

Nicholas R. Waters, Florence Abram, Fiona Brennan, Ashleigh Holmes, Leighton Pritchard

Research output: Working paper

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Abstract

The Clermont PCR method of phylotyping Escherichia coli has remained a useful classification scheme despite the proliferation of higher-resolution sequence typing schemes. We have implemented an in silico Clermont PCR method as both a web app and as a command-line tool to allow researchers to easily apply this phylotyping scheme to genome assemblies easily.
Original languageEnglish
Place of PublicationCold Spring Harbor, NY
Number of pages6
DOIs
Publication statusPublished - 31 Dec 2019

Keywords

  • phylotyping
  • Escherichia coli
  • Clermont PCR method

Research Output

riboSeed: leveraging prokaryotic genomic architecture to assemble across ribosomal regions

Waters, N. R., Abram, F., Brennan, F., Holmes, A. & Pritchard, L., 20 Jun 2018, In : Nucleic Acids Research. 46, 11, 10 p., e68.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
1 Downloads (Pure)

Activities

PhD Supervision

Fiona Brennan (Advisor), Florence Abram (Advisor), Leighton Pritchard (Advisor), Ashleigh Holmes (Advisor) & Nicholas R. Waters (Recipient)

1 May 201631 May 2020

Activity: Other activity typesOther

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