DynamO: a free O(N) general event-driven molecular dynamics simulator

M. N. Bannerman, R. Sargant, L. Lue

Research output: Contribution to journalArticle

91 Citations (Scopus)

Abstract

Molecular dynamics algorithms for systems of particles interacting through discrete or "hard" potentials are fundamentally different to the methods for continuous or "soft" potential systems. Although many software packages have been developed for continuous potential systems, software for discrete potential systems based on event-driven algorithms are relatively scarce and specialized. We present DynamO, a general event-driven simulation package, which displays the optimal O(N) asymptotic scaling of the computational cost with the number of particles N, rather than the O(N log N) scaling found in most standard algorithms. DynamO provides reference implementations of the best available event-driven algorithms. These techniques allow the rapid simulation of both complex and large (>10(6) particles) systems for long times. The performance of the program is bench-marked for elastic hard sphere systems, homogeneous cooling and sheared inelastic hard spheres, and equilibrium Lennard-Jones fluids. 

Original languageEnglish
Pages (from-to)3329-3338
Number of pages10
JournalJournal of Computational Chemistry
Volume32
Issue number15
DOIs
Publication statusPublished - 30 Nov 2011

Keywords

  • molecular dynamics
  • event-driven simulation
  • discontinuous potentials
  • hard spheres
  • square-well potential
  • force field
  • computer simulation
  • gases

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  • Research Output

    • 91 Citations
    • 1 Article

    Anomalous heat transport in binary hard-sphere gases

    Moir, C., Lue, L., Gale, J. D., Raiteri, P. & Bannerman, M. N., 29 Mar 2019, In : Physical Review E. 99, 3, 5 p., 030102.

    Research output: Contribution to journalArticle

    Open Access
    File
  • 1 Citation (Scopus)
    13 Downloads (Pure)

    Activities

    • 1 Participation in conference
    • 1 Invited talk

    Introduction to event-driven molecular simulation using DynamO

    Leo Lue (Invited speaker)

    23 Jan 2015

    Activity: Talk or presentation typesInvited talk

    AIChE Annual Meeting 2013

    Leo Lue (Speaker)

    5 Nov 2013

    Activity: Participating in or organising an event typesParticipation in conference

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