Draft genome sequences of three chemically rich actinomycetes isolated from Mediterranean sponges

Hannes Horn, Cheng Cheng, RuAngelie Edrada-Ebel, Ute Hentschel, Usama Ramadan Abdelmohsen

Research output: Contribution to journalArticle

4 Citations (Scopus)

Abstract

Metabolomic analysis has shown the chemical richness of the sponge-associated actinomycetes. Streptomyces sp. SBT349,. Nonomureae sp. SBT364, and. Nocardiopsis sp. SBT366. The genomes of these actinomycetes were sequenced and the genomic potential for secondary metabolism was evaluated. Their draft genomes have sizes of 8.0, 10, and 5.8. Mb having 687, 367, and 179 contigs with a GC content of 71.6, 70.7, and 72.7%, respectively. Moreover, antiSMASH 3.0 predicted 108, 149, and 75 secondary metabolite gene clusters, respectively which highlight the metabolic capacity of the three actinomycete species to produce diverse classes of natural products.

LanguageEnglish
Pages285-287
Number of pages3
JournalMarine Genomics
Volume24
Early online date20 Oct 2015
DOIs
Publication statusPublished - 1 Dec 2015

Fingerprint

Actinobacteria
Porifera
sponge
genome
Genome
secondary metabolite
Nocardiopsis
Secondary Metabolism
Genome Size
genomics
Metabolomics
metabolism
Streptomyces
Base Composition
metabolomics
Multigene Family
Biological Products
multigene family
secondary metabolites
gene

Keywords

  • actinomycetes
  • Mediterranean sponges
  • secondary metabolism
  • draft genome
  • metabolic capacity

Cite this

Horn, Hannes ; Cheng, Cheng ; Edrada-Ebel, RuAngelie ; Hentschel, Ute ; Abdelmohsen, Usama Ramadan. / Draft genome sequences of three chemically rich actinomycetes isolated from Mediterranean sponges. In: Marine Genomics. 2015 ; Vol. 24. pp. 285-287.
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Draft genome sequences of three chemically rich actinomycetes isolated from Mediterranean sponges. / Horn, Hannes; Cheng, Cheng; Edrada-Ebel, RuAngelie; Hentschel, Ute; Abdelmohsen, Usama Ramadan.

In: Marine Genomics, Vol. 24, 01.12.2015, p. 285-287.

Research output: Contribution to journalArticle

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