Determine measurement set for parameter estimation in biological systems modeling

Hong Yue, J.F. Jia

Research output: Contribution to conferencePaper

27 Downloads (Pure)

Abstract

Parameter estimation is challenging for biological systems modelling since the model is normally of high dimension, the measurement data are sparse and noisy, and the cost of experiments is high. Accurate recovery of parameters depend on the quantity and quality of measurement data. It is therefore important to know what measurements to be taken, when and how through optimal experimental design (OED). In this paper we present a method to determine the most informative measurement set for parameter estimation of dynamic systems, in particular biochemical reaction systems, such that the unknown parameters can be inferred with the best possible statistical quality using the data collected from the designed experiments. System analysis using matrix theory is introduced to examine the number of necessary measurement variables. The priority of each measurement variable is determined by optimal experimental design based on Fisher information matrix (FIM). The applicability and advantages of the proposed method are illustrated through an example of a signal pathway model.
Original languageEnglish
Pages7457-7462
Number of pages6
Publication statusPublished - Jul 2012
Event31st Chinese Control Conference (CCC2012) - Hefei, China
Duration: 25 Jul 201227 Jul 2012

Conference

Conference31st Chinese Control Conference (CCC2012)
CountryChina
CityHefei
Period25/07/1227/07/12

Fingerprint

Biological systems
Parameter estimation
Computer simulation
Design of experiments
Fisher information matrix
Dynamical systems
Experiments
Systems analysis
Recovery
Costs

Keywords

  • measurement set
  • parameter estimation
  • biological system modelling
  • parameter estimation
  • biological systems
  • measurement set selection
  • optimal experimental design

Cite this

Yue, H., & Jia, J. F. (2012). Determine measurement set for parameter estimation in biological systems modeling. 7457-7462. Paper presented at 31st Chinese Control Conference (CCC2012), Hefei, China.
Yue, Hong ; Jia, J.F. / Determine measurement set for parameter estimation in biological systems modeling. Paper presented at 31st Chinese Control Conference (CCC2012), Hefei, China.6 p.
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Yue, H & Jia, JF 2012, 'Determine measurement set for parameter estimation in biological systems modeling' Paper presented at 31st Chinese Control Conference (CCC2012), Hefei, China, 25/07/12 - 27/07/12, pp. 7457-7462.

Determine measurement set for parameter estimation in biological systems modeling. / Yue, Hong; Jia, J.F.

2012. 7457-7462 Paper presented at 31st Chinese Control Conference (CCC2012), Hefei, China.

Research output: Contribution to conferencePaper

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Yue H, Jia JF. Determine measurement set for parameter estimation in biological systems modeling. 2012. Paper presented at 31st Chinese Control Conference (CCC2012), Hefei, China.