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Abstract
With the ever-growing need to study systems of increased size and complexity, modern density functional theory (DFT) methods often encounter problems arising from the growing computational demands. In this work, we have presented a comprehensive DFT validation of the steered molecular dynamics (SMD) approach in estimating the binding energies of aromatic dimers. By performing DFT calculations on optimized and unoptimized anthracene and rhodamine 6G (R6G) dimers using functionals with progressively enhanced exchange-correlation energy description and comparing the obtained results with SMD-predicted values, it was found that SMD predictions are in good agreement with the results obtained from hybrid DFT calculations. The average binding energies for optimized anthracene dimers were found to be 6.46 kcal/mol using DFT at ωB97X-D4/def2-QZVPP and 7.64 ± 1.61 kcal/mol as predicted by the SMD. For the R6G H-type dimer, the binding energies were 17.48 and 19.02 ± 2.22 kcal/mol, respectively. The study also revealed that due to the lack of explicit terms accounting for electron–electron interactions in MD force fields, the proposed method tends to overbind dimers. It is anticipated that the presented method can be applied to more complex dimers, potentially accelerating the calculations of binding energies. Moreover, this study further validates the accuracy of the CHARMM36 FF.
Original language | English |
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Pages (from-to) | 2946–2957 |
Number of pages | 12 |
Journal | Journal of Physical Chemistry A |
Volume | 129 |
Issue number | 12 |
Early online date | 6 Feb 2025 |
DOIs | |
Publication status | Published - 27 Mar 2025 |
Funding
D.D. would like to thank PQ Corporation, the University of Strathclyde, and EPSRC for the Ph.D. studentship (EP/T517938/1).
Keywords
- density functional theory
- DFT
- molecular dynamics
- MD
- steered molecular dynamics
- SMD
- binding energy
- Rhodamine 6G
- R6G
- anthracene
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Dive into the research topics of 'Binding energy calculations of anthracene and rhodamine 6G H-type dimers: a comparative study of DFT and SMD methods'. Together they form a unique fingerprint.Projects
- 1 Finished
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Doctoral Training Partnership 2020-2021 University of Strathclyde | Doveiko, Daniel
Chen, Y. (Principal Investigator) & Doveiko, D. (Research Co-investigator)
EPSRC (Engineering and Physical Sciences Research Council)
1/10/21 → 1/04/25
Project: Research Studentship - Internally Allocated
Datasets
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Data for "Binding Energy Calculations of Anthracene and Rhodamine 6G H-type Dimers: A Comparative Study of DFT and SMD Methods"
Doveiko, D. (Creator), Kubiak-Ossowska, K. (Supervisor) & Chen, Y. (Supervisor), University of Strathclyde, 3 Feb 2025
DOI: 10.15129/74c3602c-f376-4e0f-baa4-e8107e727777
Dataset