Projects per year
Abstract
We present a new model for computing hydration free energies by 3D reference interaction site model (3D-RISM) that uses an appropriate initial state of the system (as suggested by Sergiievskyi et al.). The new adjustment to 3D-RISM theory significantly improves hydration free energy predictions for various classes of organic molecules at both ambient and non-ambient temperatures. An extensive benchmarking against experimental data shows that the accuracy of the model is comparable to (much more computationally expensive) molecular dynamics simulations. The calculations can be readily performed with a standard 3D-RISM algorithm. In our work, we used an open source package AmberTools; a script to automate the whole procedure is available on the web (https://github.com/ MTS-Strathclyde/ISc)
Original language | English |
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Article number | 091105 |
Number of pages | 6 |
Journal | Journal of Chemical Physics |
Volume | 142 |
Issue number | 9 |
Early online date | 6 Mar 2015 |
DOIs | |
Publication status | Published - 7 Mar 2015 |
Keywords
- 3DRISM
- hydration free energy
- temperature-dependence
- solvation
- hydration
- thermodynamics
- integral equation theory of molecular liquids
- chemistry
- physics
- molecular simulation
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Dive into the research topics of 'Accurate hydration free energies at a wide range of temperatures from 3D-RISM'. Together they form a unique fingerprint.Profiles
Projects
- 1 Finished
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Ietsol Calculation Of Pharmacokinetic Properties Of Druglike Molecules Using Integral Equation Theory
Fedorov, M.
European Commission - FP7 - General
1/02/12 → 31/01/14
Project: Research
Equipment
Research output
- 57 Citations
- 1 Speech
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Computational biomolecular design using the integral equation theory of molecular liquids: from drug discovery to bionanotechnology
Palmer, D., 4 Mar 2015.Research output: Contribution to conference › Speech
Activities
- 1 Invited talk
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Computational Biomolecular Design using the Integral Equation Theory of Molecular Liquids: from Drug Discovery to Bionanotechnology
David Palmer (Contributor)
27 Apr 2015Activity: Talk or presentation types › Invited talk