Personal profile

Personal Statement

My work as a bioinformatician has primarily been applied to plant pathogens, and covered multiple kingdoms of life including viruses, bacteria, and Eukaryotes like nematodes, and occasionally plants. One major project focused on metabarcoding of environmental DNA for oomycetes with implications for tree health, developing the THAPBI PICT pipeline. I am currently working on pyANI-plus for whole-genome classification of microbes using Average Nucleotide Identity and similar methods. These projects and most of my other software work is released as Open Source. I have for many years contributed to the Biopython Project and the Open Bioinformatics Foundation as a board member, and am the current president.

Expertise related to UN Sustainable Development Goals

In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):

  • SDG 2 - Zero Hunger
  • SDG 3 - Good Health and Well-being
  • SDG 6 - Clean Water and Sanitation
  • SDG 15 - Life on Land

Keywords

  • Bioinformatics
  • Open Source
  • Genomics
  • eDNA
  • Environmental DNA
  • metabarcoding
  • Computational Biology

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Collaborations and top research areas from the last five years

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