Research output per year
Research output per year
- 1 - 50 out of 139 results
Search results
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2024
The impact of methylparaben and chlorine on the architecture of Stenotrophomonas maltophilia biofilms
Pereira, A. R., Rooney, L. M., Gomes, I. B., Simões, M. & McConnell, G., 15 Nov 2024, In: Science of the Total Environment. 951, 175646.Research output: Contribution to journal › Article › peer-review
Open AccessFile2 Downloads (Pure) -
Printing, characterizing, and assessing transparent 3D printed lenses for optical imaging
Rooney, L. M., Christopher, J., Watson, B., Susir Kumar, Y., Copeland, L., Walker, L. D., Foylan, S., Amos, W. B., Bauer, R. & McConnell, G., 7 Aug 2024, In: Advanced Materials Technologies. 9, 15, 14 p., 2400043.Research output: Contribution to journal › Article › peer-review
Open AccessFile1 Citation (Scopus)24 Downloads (Pure) -
A novel 3D imaging approach for quantification of GLUT4 levels across the intact myocardium
Geiser, A., Currie, S., Al-Hasani, H., Chadt, A., McConnell, G. & Gould, G. W., 15 Oct 2024, In: Journal of Cell Science. 137, 20, 12 p., jcs262146.Research output: Contribution to journal › Article › peer-review
Open AccessFile2 Downloads (Pure) -
Multimodal optical mesoscopy reveals the quantity and spatial distribution of gram-positive biofilms in ex vivo tonsils
Clapperton, M., Kunanandam, T., Florea, C. D., Douglas, C. M. & McConnell, G., 1 Aug 2024, In: Journal of Microscopy. 295, 2, p. 121-130 10 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile1 Citation (Scopus)25 Downloads (Pure) -
Open, reproducible hardware for microscopy
Bowman, R., Müllenbroich, C., Diederich, B., McConnell, G., Faez, S. & Arancio, J., 9 Jul 2024, In: Philosophical Transactions of the Royal Society A: Mathematical Physical and Engineering Sciences. 382, 2274, 4 p., 20230112.Research output: Contribution to journal › Editorial › peer-review
Open AccessFile4 Downloads (Pure) -
Printing, characterising, and applying transparent 3D printed lenses for optical imaging
Rooney, L., Christopher, J., Watson, B., Susir Kumar, Y., Copeland, L., Walker, L., Foylan, S., Amos, W., Bauer, R. & McConnell, G., 3 Jun 2024.Research output: Contribution to conference › Poster › peer-review
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Sensing across scales: three approaches to study biofilm oxygen gradients to inform the design of better antimicrobial therapeutics
Rooney, L., Bottura, B., Dietrich, L. & McConnell, G., 3 Jun 2024.Research output: Contribution to conference › Poster › peer-review
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An easy to use tool for the analysis of subcellular mRNA transcript colocalisation in smFISH data
Bentley-Abbot, C., Heslop, R., Pirillo, C., Chandrasegaran, P., McConnell, G., Roberts, E., Hutchinson, E. & MacLeod, A., 9 Apr 2024, In: Scientific Reports. 14, 1, 9 p., 8348.Research output: Contribution to journal › Article › peer-review
Open AccessFile16 Downloads (Pure) -
Using 3D printed optical elements for multifocal image scanning microscopy
Christopher, J., Donnachie, M., Rooney, L., McConnell, G., Uttamchandani, D. & Bauer, R., 12 Mar 2024, In: Proceedings of SPIE. 12827, 1282702.Research output: Contribution to journal › Conference article › peer-review
Open AccessFile3 Downloads (Pure) -
Low-cost 3D printed lenses for brightfield and fluorescence microscopy
Christopher, J., Rooney, L. M., Donnachie, M., Uttamchandani, D., McConnell, G. & Bauer, R., 7 Mar 2024, In: Biomedical Optics Express. 15, 4, p. 2224-2237 14 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile2 Citations (Scopus)30 Downloads (Pure) -
Construction and characterisation of a structured, tuneable, and transparent 3D culture platform for soil bacteria
Rooney, L. M., Dupuy, L. X., Hoskisson, P. A. & McConnell, G., 30 Jan 2024, In: Microbiology. 170, 1, 10 p., 001429.Research output: Contribution to journal › Article › peer-review
Open AccessFile1 Citation (Scopus)33 Downloads (Pure) -
Time-lapse mesoscopy of Candida albicans and Staphylococcus aureus dual-species biofilms reveals a structural role for the hyphae of C. albicans in biofilm formation
Baxter, K. J., Sargison, F. A., Fitzgerald, J. R., McConnell, G. & Hoskisson, P. A., 23 Jan 2024, In: Microbiology. 170, 1, 12 p., 001426.Research output: Contribution to journal › Article › peer-review
Open AccessFile40 Downloads (Pure) -
2023
Low-cost 3D printed lenses for brightfield and fluorescence microscopy
Christopher, J., Rooney, L. M., Donnachie, M., Uttamchandani, D., McConnell, G. & Bauer, R., 7 Dec 2023, Cold Spring Harbor, NY, p. 1-11, 11 p.Research output: Working paper › Working Paper/Preprint
Open AccessFile17 Downloads (Pure) -
Printing, characterising, and assessing transparent 3D printed lenses for optical imaging
Rooney, L. M., Christopher, J., Watson, B., Susir Kumar, Y., Copeland, L., Walker, L. D., Foylan, S., Amos, W. B., Bauer, R. & McConnell, G., 2 Dec 2023, Cold Spring Harbor, NY, p. 1-21, 21 p.Research output: Working paper › Working Paper/Preprint
Open AccessFile5 Downloads (Pure) -
Fractal complexity of Escherichia coli nutrient transport channels is influenced by cell shape and growth environment
Bottura, B., Rooney, L., Feeney, M., Hoskisson, P. A. & McConnell, G., 29 Nov 2023, Cold Spring Harbor, NY, p. 1-15, 15 p.Research output: Working paper › Working Paper/Preprint
Open AccessFile22 Downloads (Pure) -
Multimodal optical mesoscopy reveals the quantity and spatial distribution of gram-positive biofilms in ex vivo tonsils
Clapperton, M., Kunanandam, T., Florea, C. D., Douglas, C. M. & McConnell, G., 3 Jul 2023, Ithaca, NY, 12 p.Research output: Working paper › Working Paper/Preprint
Open AccessFile35 Downloads (Pure) -
Using 3D printed optics for fluorescence microscopy
Christopher, J., Rooney, L., McConnell, G. & Bauer, R., 3 Jul 2023.Research output: Contribution to conference › Abstract › peer-review
Open AccessFile83 Downloads (Pure) -
Mesoscale standing wave imaging
Foylan, S., Schniete, J. K., Kölln, L. S., Dempster, J., Hansen, C. G., Shaw, M., Bushell, T. J. & McConnell, G., 17 May 2023, In: Journal of Microscopy. 295, 1, p. 33-41 9 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile1 Citation (Scopus)32 Downloads (Pure) -
Whole-brain imaging of freely-moving zebrafish
Hasani, H., Sun, J., Zhu, S. I., Rong, Q., Willomitzer, F., Amor, R., McConnell, G., Cossairt, O. & Goodhill, G. J., 17 Apr 2023, In: Frontiers in Neuroscience. 17, 14 p., 1127574.Research output: Contribution to journal › Article › peer-review
Open AccessFile5 Citations (Scopus)32 Downloads (Pure) -
MesoTIRF: a prism-based total internal reflection fluorescence illuminator for high resolution, high contrast imaging of large cell populations
Foylan, S., Amos, W. B., Dempster, J., Köelln, L., Hansen, C. G., Shaw, M. & McConnell, G., 13 Mar 2023, In: Applied Physics Letters. 122, 11, 7 p., 113701.Research output: Contribution to journal › Article › peer-review
Open AccessFile3 Citations (Scopus)37 Downloads (Pure) -
A simple image processing pipeline to sharpen topology maps in multi-wavelength interference microscopy
Tinning, P. W., Schniete, J. K., Scrimgeour, R., Kölln, L. S., Rooney, L. M., Bushell, T. J. & McConnell, G., 16 Feb 2023, In: Optics Letters. 48, 5, p. 1092-1095 4 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile1 Citation (Scopus)26 Downloads (Pure) -
Addressing multi-scale microbial challenges using the Mesolens
Rooney, L. M., Bottura, B., Baxter, K., Amos, W. B., Hoskisson, P. A. & McConnell, G., 24 Jan 2023, (E-pub ahead of print) In: Journal of Microscopy. 5 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile1 Citation (Scopus)31 Downloads (Pure) -
2022
Intra-colony channel morphology in Escherichia coli biofilms is governed by nutrient availability and substrate stiffness
Bottura, B., Rooney, L. M., Hoskisson, P. A. & McConnell, G., 31 Dec 2022, In: Biofilm. 4, 14 p., 100084.Research output: Contribution to journal › Article › peer-review
Open AccessFile8 Citations (Scopus)39 Downloads (Pure) -
Light-sheet mesoscopy with the Mesolens provides fast sub-cellular resolution imaging throughout large tissue volumes
Battistella, E., Schniete, J., Wesencraft, K., Quintana, J. F. & McConnell, G., 16 Sept 2022, In: iScience. 25, 9, 19 p., 104797.Research output: Contribution to journal › Article › peer-review
Open AccessFile7 Citations (Scopus)42 Downloads (Pure) -
Intra-colony channel morphology in Escherichia coli biofilms is governed by nutrient availability and substrate stiffness
Bottura, B., Rooney, L. M., Hoskisson, P. A. & McConnell, G., 29 Aug 2022, Cold Spring Harbor, New York, 14 p.Research output: Working paper › Working Paper/Preprint
Open AccessFile1 Downloads (Pure) -
MesoTIRF: Total Internal Reflection Fluorescence across a 4.4 mm x 3.0 mm field of view
Foylan, S., Shaw, M. (ed.) & McConnell, G. (ed.), 29 Jun 2022.Research output: Contribution to conference › Poster
Open AccessFile21 Downloads (Pure) -
Application of light-sheet mesoscopy to image host-pathogen interactions in intact organs
Battistella, E., Quintana, J. F. & McConnell, G., 14 Jun 2022, In: Frontiers in Cellular and Infection Microbiology : Parasite and Host. 12, 12 p., 903957.Research output: Contribution to journal › Article › peer-review
Open AccessFile2 Citations (Scopus)29 Downloads (Pure) -
Quantifying the effect of substrate composition on intra-colony channel morphology in E. coli biofilms using a custom-made open-source image analysis pipeline
Bottura, B., Rooney, L. M., Hoskisson, P. A. & McConnell, G., 7 Jun 2022.Research output: Contribution to conference › Poster
Open AccessFile15 Downloads (Pure) -
Challenges and advances in optical 3D mesoscale imaging
Munck, S., Cawthorne, C., Escamilla‐Ayala, A., Kerstens, A., Gabarre, S., Wesencraft, K., Battistella, E., Craig, R., Reynaud, E. G., Swoger, J. & McConnell, G., Jun 2022, In: Journal of Microscopy. 286, 3, p. 201-219 19 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile10 Citations (Scopus)102 Downloads (Pure) -
Intra-colony channel morphology in Escherichia coli biofilms is governed by nutrient availability and substrate stiffness
Bottura, B., Rooney, L. M., Hoskisson, P. A. & McConnell, G., 3 Apr 2022.Research output: Contribution to conference › Poster
Open AccessFile16 Downloads (Pure) -
Enhanced fluorescence from semiconductor quantum dot-labelled cells excited at 280 nm
McFarlane, M., Hall, N. & McConnell, G., 1 Apr 2022, In: Methods and Applications in Fluorescence . 10, 2, 10 p., 025004.Research output: Contribution to journal › Article › peer-review
Open AccessFile1 Citation (Scopus)46 Downloads (Pure) -
Label2label: training a neural network to selectively restore cellular structures in fluorescence microscopy
Kölln, L. S., Salem, O., Valli, J., Hansen, C. G. & McConnell, G., 10 Feb 2022, In: Journal of Cell Science. 135, 3, 22 p., jcs258994.Research output: Contribution to journal › Article › peer-review
Open AccessFile4 Citations (Scopus)28 Downloads (Pure) -
2021
Investigating the response of skeletal muscle to prosthesis-related loading conditions: an ex vivo animal model
Graser, M., Wark, A., Day, S., Sandison, M., McConnell, G. & Buis, A., 4 Nov 2021. 1 p.Research output: Contribution to conference › Paper › peer-review
Open AccessFile42 Downloads (Pure) -
Optical mesoscopy, machine learning, and computational microscopy enable high information content diagnostic imaging of blood films
Shaw, M., Claveau, R., Manescu, P., Elmi, M., Brown, B. J., Scrimgeour, R., Kölln, L. S., McConnell, G. & Fernandez‐Reyes, D., 30 Sept 2021, In: Journal of Pathology. 255, 1, p. 62-71 10 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile9 Citations (Scopus)40 Downloads (Pure) -
Using the Mesolens to observe structural changes in E. coli mature colony biofilms under different nutrient availability
Bottura, B., Hoskisson, P. & McConnell, G., 5 Jul 2021.Research output: Contribution to conference › Poster
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Fractal patterns in E. coli biofilms are preserved under various growth conditions
Bottura, B., Hoskisson, P. & McConnell, G., 1 Jun 2021.Research output: Contribution to conference › Poster
Open AccessFile3 Downloads (Pure) -
Using the Mesolens to observe structural changes in E. coli mature colony biofilms under different nutrient availability
Bottura, B., Hoskisson, P. & McConnell, G., 25 May 2021.Research output: Contribution to conference › Poster
Open AccessFile14 Downloads (Pure) -
ScRNA transcription profile of adult zebrafish podocytes using a novel reporter strain
Brown, C., Mullins, L. J., Wesencraft, K., McConnell, G., Beltran, M., Henderson, N. C., Conway, B., Hoffmann, S., Rider, S. & Mullins, J. J., 5 May 2021, (E-pub ahead of print) In: Cellular Physiology and Biochemistry. 55, p. 35-47 13 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile3 Citations (Scopus)15 Downloads (Pure) -
An evaluation of multi-excitation-wavelength standing-wave fluorescence microscopy (TartanSW) to improve sampling density in studies of the cell membrane and cytoskeleton
Schniete, J. K., Tinning, P. W., Scrimgeour, R. C., Robb, G., Kölln, L. S., Wesencraft, K., Paul, N. R., Bushell, T. J. & McConnell, G., 3 Feb 2021, In: Scientific Reports. 11, 10 p., 2903.Research output: Contribution to journal › Article › peer-review
Open AccessFile3 Citations (Scopus)49 Downloads (Pure) -
2020
Three-dimensional in situ morphometrics of Mycobacterium tuberculosis infection within lesions by optical mesoscopy and novel acid-fast staining
Francis, R. J., Robb, G., McCann, L., Khatri, B., Keeble, J., Dagg, B., Amos, B., Salguero, F. J., Ho, M. M., Bullen, A., McConnell, G. & MacLellan-Gibson, K., 11 Dec 2020, In: Scientific Reports. 10, 11 p., 21774.Research output: Contribution to journal › Article › peer-review
Open AccessFile5 Citations (Scopus)24 Downloads (Pure) -
Intra-colony channels in E. coli function as a nutrient uptake system
Rooney, L. M., Amos, W. B., Hoskisson, P. A. & McConnell, G., 31 Oct 2020, In: ISME Journal. 14, 10, p. 2461-2473 13 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile45 Citations (Scopus)40 Downloads (Pure) -
Characterisation of a deep-ultraviolet light-emitting diode emission pattern via fluorescence
McFarlane, M. & McConnell, G., 9 Apr 2020, In: Measurement Science and Technology . 31, 7, 5 p., 077001.Research output: Contribution to journal › Article › peer-review
Open AccessFile33 Downloads (Pure) -
Three-dimensional observations of an aperiodic oscillatory gliding behavior in Myxococcus xanthus using confocal interference reflection microscopy
Rooney, L. M., Kölln, L. S., Scrimgeour, R., Amos, W. B., Hoskisson, P. A. & McConnell, G., 29 Jan 2020, In: mSphere. 5, 1, 13 p., e00846-19.Research output: Contribution to journal › Article › peer-review
Open AccessFile61 Downloads (Pure) -
2019
Of microscopes and microbes: characterising a novel nutrient uptake system in Escherichia coli biofilms
Rooney, L. M., Hoskisson, P. A. & McConnell, G., 7 Jul 2019. 1 p.Research output: Contribution to conference › Poster › peer-review
Open AccessFile49 Downloads (Pure) -
Applications of high brightness 280nm LEDs in biomedical optical imaging
McFarlane, M., McConnell, G. & Whoriskey, G., 5 Jun 2019.Research output: Contribution to conference › Poster
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TartanSW: filling the information gap in standing wave microscopy
Tinning, P. W., Schniete, J. K., Scrimgeour, R. & McConnell, G., 5 Jun 2019. 1 p.Research output: Contribution to conference › Poster
Open AccessFile24 Downloads (Pure) -
Visualising the structure of bacterial communities: characterising a novel nutrient uptake system in Escherichia coli biofilms
Rooney, L. M., Hoskisson, P. A. & McConnell, G., 5 Jun 2019. 1 p.Research output: Contribution to conference › Poster › peer-review
Open AccessFile42 Downloads (Pure) -
Applications of high brightness 280nm LEDs in biomedical optical imaging
McFarlane, M., McConnell, G. & Whoriskey, G., 29 May 2019.Research output: Contribution to conference › Poster
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2018
Fast optical sectioning for widefield fluorescence mesoscopy with the mesolens based on HiLo microscopy
Schniete, J., Franssen, A., Dempster, J., Bushell, T. J., Amos, W. B. & McConnell, G., 2 Nov 2018, In: Scientific Reports. 8, 10 p., 16259.Research output: Contribution to journal › Article › peer-review
Open AccessFile22 Citations (Scopus)47 Downloads (Pure) -
Applying the Mesolens to microbiology: investigating the structural organisation of bacterial biofilms
Rooney, L. M., McCann, L., Hoskisson, P. A. & McConnell, G., 27 Jun 2018.Research output: Contribution to conference › Poster › peer-review
Open AccessFile110 Downloads (Pure)