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Research Output

2020

A closure study of ocean inherent optical properties using flow cytometry measurements

Zhao, Y., Poulin, C., McKee, D., Hu, L., Agagliate, J., Yang, P. & Xiaodong, Z., 31 Jan 2020, In : Journal of Quantitative Spectroscopy and Radiative Transfer. 241, p. 1-9 9 p., 106730.

Research output: Contribution to journalArticle

Open Access
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8 Downloads (Pure)

Artificial light during the polar night disrupts Arctic fish and zooplankton behaviour down to 200 m depth

Berge, J., Geoffroy, M., Daase, M., Cottier, F., Priou, P., Cohen, J. H., Johnsen, G., McKee, D., Kostakis, I., Renaud, P. E., Vogedes, D., Anderson, P., Last, K. S. & Gauthier, S., 5 Mar 2020, In : Communications Biology. 3, 8 p., 102.

Research output: Contribution to journalArticle

Open Access
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Low-cost, open-access quantitative phase imaging of algal cells using the transport of intensity equation

Grant, S. D., Richford, K., Burdett, H. L., McKee, D. & Patton, B. R., 29 Jan 2020, In : Royal Society Open Science. 7, 1, 12 p., 191921.

Research output: Contribution to journalArticle

Open Access
File
3 Downloads (Pure)
2019

A compilation of global bio-optical in situ data for ocean-colour satellite applications - version two

Valente, A., Sathyendranath, S., Brotas, V., Groom, S., Grant, M., Taberner, M., Antoine, D., Arnone, R., Balch, W. M., Barker, K., Barlow, R., Bélanger, S., Berthon, J-F., Beşiktepe, S., Borsheim, Y., Bracher, A., Brando, V., Canuti, E., Chavez, F., Cianca, A. & 36 others, Claustre, H., Clementson, L., Crout, R., Frouin, R., García-Soto, C., Gibb, S. W., Gould, R., Hooker, S. B., Kahru, M., Kampel, M., Klein, H., Kratzer, S., Kudela, R., Ledesma, J., Loisel, H., Matrai, P., Mckee, D., Mitchell, B. G., Moisan, T., Muller-Karger, F., O'Dowd, L., Ondrusek, M., Platt, T., Poulton, A. J., Repecaud, M., Schroeder, T., Smyth, T., Smythe-Wright, D., Sosik, H. M., Twardowski, M., Vellucci, V., Voss, K., Werdell, J., Wernand, M., Wright, S. & Zibordi, G., 15 Jul 2019, In : Earth System Science Data. 11, 3, p. 1037-1068 32 p.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)

Remote sensing of zooplankton swarms

Basedow, S. L., McKee, D., Lefering, I., Gislason, A., Daase, M., Trudnowska, E., Egeland, E. S., Choquet, M. & Falk-Petersen, S., 24 Jan 2019, In : Scientific Reports. 9, 1, 10 p., 686.

Research output: Contribution to journalArticle

Open Access
File
18 Downloads (Pure)
2018

Estimation of suspended matter, organic carbon and chlorophyll-A concentrations estimation from particle size and refractive index distributions

Agagliate, J., Röttgers, R., Heymann, K. & McKee, D., 19 Dec 2018, In : Applied Sciences. 8, 12, 19 p., 2676.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
42 Downloads (Pure)

Evaluation of a flow cytometry method to determine size and real refractive index distributions in natural marine particle populations

Agagliate, J., Röttgers, R., Twardowski, M. S. & McKee, D., 1 Mar 2018, In : Applied Optics. 57, 7, p. 1705-1716 12 p.

Research output: Contribution to journalArticle

Open Access
File
7 Citations (Scopus)
13 Downloads (Pure)

Forward modeling of inherent optical properties from flow cytometry estimates of particle size and refractive index

Agagliate, J., Lefering, I. & McKee, D., 10 Mar 2018, In : Applied Optics. 57, 8, p. 1777-1788 12 p.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
16 Downloads (Pure)

Inversion of in situ light absorption and attenuation measurements to estimate constituent concentrations in optically complex shelf seas

Ramírez-Pérez, M., Twardowski, M., Trees, C., Piera, J. & McKee, D., 31 Jan 2018, In : Journal of Geophysical Research: Oceans. 123, 1, p. 720-737 18 p.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
9 Downloads (Pure)

Measurement uncertainties in PSICAM and reflective tube absorption meters

Lefering, I., Röttgers, R., Utschig, C., Twardowski, M. S. & McKee, D., 17 Sep 2018, In : Optics Express. 26, 19, p. 24384-24402 19 p.

Research output: Contribution to journalArticle

Open Access
File
8 Downloads (Pure)

The use of a quadcopter-mounted hyper-spectral spectrometer for examining reflectance in Scottish coastal waters

Weeks, R. J., Anderson, P., Davidson, K. & McKee, D., 31 Oct 2018, 2018 IEEE International Geoscience and Remote Sensing Symposium, IGARSS 2018 - Proceedings. Piscataway, N.J., p. 8826-8829 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution book

Open Access
File
2 Downloads (Pure)
2017

Assessing uncertainties in scattering correction algorithms for reflective tube absorption measurements made with a WET Labs ac-9

Stockley, N. D., Röttgers, R., McKee, D., Lefering, I., Sullivan, J. M. & Twardowski, M. S., 10 Nov 2017, In : Optics Express. 25, 24, p. A1139-A1153 15 p.

Research output: Contribution to journalArticle

Open Access
File
12 Citations (Scopus)
50 Downloads (Pure)

Determination of the absorption coefficient of chromophoric dissolved organic matter from underway spectrophotometry

Dall'Olmo, G., Brewin, R. J. W., Nencioli, F., Organelli, E., Lefering, I., McKee, D., Röttgers, R., Mitchell, C., Boss, E., Bricaud, A. & Tilstone, G., 31 Oct 2017, In : Optics Express. 25, 24, p. A1079-A1095 17 p.

Research output: Contribution to journalArticle

Open Access
File
5 Citations (Scopus)
88 Downloads (Pure)

Large scale three-dimensional modelling for wave and tidal energy resource and environmental impact: methodologies for quantifying acceptable thresholds for sustainable exploitation

Gallego, A., Side, J., Baston, S., Waldman, S., Bell, M., James, M., Davies, I., O'Hara Murray, R., Heath, M., Sabatino, A., McKee, D., McCaig, C., Karunarathna, H., Fairley, I., Chatzirodou, A., Venugopal, V., Nemalidinne, R., Yung, T. Z., Vögler, A., MacIver, R. & 1 others, Burrows, M., 1 Oct 2017, In : Ocean and Coastal Management. 147, p. 67-77 11 p.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
88 Downloads (Pure)

The area-to-mass ratio and fractal dimension of marine flocs

Bowers, D. G., McKee, D., Jago, C. F. & Nimmo-Smith, W. A. M., 5 Apr 2017, In : Estuarine, Coastal and Shelf Science. 189, p. 224-234 11 p.

Research output: Contribution to journalArticle

Open Access
File
7 Citations (Scopus)
81 Downloads (Pure)

Uncertainty budgets for liquid waveguide CDOM absorption measurements

Lefering, I., Röttgers, R., Utschig, C. & McKee, D., 1 Aug 2017, In : Applied Optics. 56, 22, p. 6357-6366 10 p.

Research output: Contribution to journalArticle

Open Access
File
8 Citations (Scopus)
14 Downloads (Pure)
2016

A bio-optical model for integration into ecosystem models for the Ligurian Sea

Bengil, F., McKee, D., Beşiktepe, S. T., Sanjuan Calzado, V. & Trees, C., 31 Dec 2016, In : Progress in Oceanography. 149, p. 1-15 15 p.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
17 Downloads (Pure)

A compilation of global bio-optical in situ data for ocean-colour satellite applications

Valente, A., Sathyendranath, S., Brotas, V., Groom, S., Grant, M., Taberner, M., Antoine, D., Arnone, R., Balch, W. M., Barker, K., Barlow, R., Belanger, S., Berthon, J. F., Besiktepe, S., Brando, V., Canuti, E., Chavez, F., Claustre, H., Crout, R., Frouin, R. & 23 others, Garcia-Soto, C., Gibb, S. W., Gould, R., Hooker, S., Kahru, M., Klein, H., Kratzer, S., Loisel, H., McKee, D., Mitchell, B. G., Moisan, T., Muller-Karger, F., O'Dowd, L., Ondrusek, M., Poulton, A. J., Repecaud, M., Smyth, T., Sosik, H. M., Twardowski, M., Voss, K., Werdell, J., Wernand, M. & Zibordi, G., 3 Jun 2016, In : Earth System Science Data. 8, 1, p. 235-252 18 p.

Research output: Contribution to journalArticle

Open Access
File
27 Citations (Scopus)
56 Downloads (Pure)
Open Access
File
63 Downloads (Pure)
Open Access
File
5 Citations (Scopus)
79 Downloads (Pure)

Improved determination of particulate absorption from combined filter pad and PSICAM measurements

Lefering, I., Röttgers, R., Weeks, R., Connor, D., Utschig, C., Heymann, K. & McKee, D., 17 Oct 2016, In : Optics Express. 24, 22, p. 24805-24823 19 p.

Research output: Contribution to journalArticle

Open Access
File
5 Citations (Scopus)
108 Downloads (Pure)

Optical closure in marine waters from in situ inherent optical property measurements

Lefering, K., Bengil, F., Trees, C., Röttgers, R., Bowers, D., Nimmo-Smith, A., Schwarz, J. & McKee, D., 27 Jun 2016, In : Optics Express. 24, 13, p. 14036-14052 17 p.

Research output: Contribution to journalArticle

Open Access
File
10 Citations (Scopus)
63 Downloads (Pure)
2015

Impact of measurement uncertainties on determination of chlorophyll-specific absorption coefficient for marine phytoplankton

McKee, D., Röttgers, R., Neukermans, G., Calzado, V. S., Trees, C., Ampolo-Rella, M., Neil, C. & Cunningham, A., 2015, In : Journal of Geophysical Research: Oceans. 13 p.

Research output: Contribution to journalArticle

Open Access
File
15 Citations (Scopus)
79 Downloads (Pure)

Inferring inherent optical properties and water constituent profiles from apparent optical properties

Fan, Y., Li, W., Calzado, V. S., Trees, C., Stamnes, S., Fournier, G., McKee, D. & Stamnes, K., 27 Jul 2015, In : Optics Express. 23, 15, p. A987-A1009 23 p.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
48 Downloads (Pure)

Segmentation of multispectral images and prediction of ChI-a concentration for effective ocean colour remote sensing

Ren, J., Zeng, X. & McKee, D., 3 Apr 2015, (Accepted/In press) 2015 IEEE International Geoscience and Remote Sensing Symposium (IGARSS). Piscataway, NJ.: IEEE, p. 2303-2306 4 p. 7326268

Research output: Chapter in Book/Report/Conference proceedingConference contribution book

Open Access
File
91 Downloads (Pure)

Use of ocean colour remote sensing to monitor sea surface suspended sediments

Sabatino, A. D., Clement, R., Heath, M. R. & McKee, D., 30 Sep 2015, TeraWatt Position Papers: A 'toolbox' of methods to better understand and assess the effects of tidal and wave energy arrays on the marine environment. Side, J. (ed.). St Andrews, p. 129-140 12 p. 6

Research output: Chapter in Book/Report/Conference proceedingChapter

Open Access
File
235 Downloads (Pure)
2014

Evaluation of scatter corrections for ac-9 absorption measurements in coastal waters

Röttgers, R., McKee, D. & Woźniak, S. B., 2014, In : Methods in Oceanography. 19 p.

Research output: Contribution to journalArticle

34 Citations (Scopus)

Optically significant particle sizes in seawater

Davies, E., McKee, D., Bowers, D. G., Graham, G. W. & Nimmo-Smith, W. A. M., 20 Feb 2014, In : Applied Optics. 53, 6, p. 1067-1074 8 p.

Research output: Contribution to journalArticle

15 Citations (Scopus)

Temperature and salinity correction coefficients for light absorption by water in the visible to infrared spectral region

Röttgers, R., McKee, D. & Utschig, C., 20 Oct 2014, In : Optics Express. 22, 21, p. 25093-25108 16 p.

Research output: Contribution to journalArticle

Open Access
File
39 Citations (Scopus)
110 Downloads (Pure)

Vertical migration maintains phytoplankton position in a tidal channel with residual flow

MacDonald, R. G., Bowers, D. G., McKee, D., Graham, G. W. & Nimmo-Smith, W. A. M., 27 Aug 2014, In : Marine Ecology Progress Series . 509, p. 113-126 14 p.

Research output: Contribution to journalArticle

Open Access
File
92 Downloads (Pure)
2013

Evaluation and improvement of an iterative scattering correction scheme for in situ absorption and attenuation measurements

McKee, D., Piskozub, J., Röttgers, R. & Reynolds, R. A., Jul 2013, In : Journal of Atmospheric and Oceanic Technology. 30, 7, p. 1527–1541 15 p.

Research output: Contribution to journalArticle

Open Access
File
24 Citations (Scopus)
93 Downloads (Pure)

Measurement of hyperspectral underwater light fields

Cunningham, A. & Mckee, D., 1 Dec 2013, Subsea Optics and Imaging. Watson, J. E. & Zielinski, O. (eds.). p. 83-97 15 p. (Woodhead Publishing Series in Electronic and Optical Materials).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)

Mueller matrix holographic method for small particle characterization: theory and numerical studies

Gao, M., Yang, P., McKee, D. & Kattawar, G. W., 20 Jul 2013, In : Applied Optics. 52, 21, p. 5289-5296 8 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

On the formation of tide-produced seiches and double high waters in coastal seas

Bowers, D. G., Macdonald, R. G., McKee, D., Nimmo-Smith, W. A. M. & Graham, G. W., 1 Dec 2013, In : Estuarine, Coastal and Shelf Science. 143, p. 108–116 9 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)
10 Citations (Scopus)
2012

Charybdis: The next generation in ocean colour and biogeochemical remote sensing

Lowe, C. J., Macdonald, M., Greenland, S. & McKee, D., 13 Aug 2012, p. Article Number SSC12-IV-7. 13 p.

Research output: Contribution to conferencePaper

File
326 Downloads (Pure)

Cochleates derived from Vibrio cholerae O1 proteoliposomes: The impact of structure transformation on mucosal immunisation

Acevedo, R., Perez, O., Zayas, C., Perez, J. L., Callico, A., Cedre, B., Garcia, L., McKee, D., Mullen, A. & Ferro, V., 12 Oct 2012, In : PLOS One. 7, 10, 8 p., e46461.

Research output: Contribution to journalArticle

Open Access
File
5 Citations (Scopus)
163 Downloads (Pure)

In situ variability of mass-specific beam attenuation and backscattering of marine particles with respect to particle size, density, and composition

Neukermans, G., Loisel, H., Meriaux, X., Astoreca, R. & McKee, D., Jan 2012, In : Limnology and Oceanography . 57, 1, p. 124-144 21 p.

Research output: Contribution to journalArticle

115 Citations (Scopus)

Pixel clustering and hyperspectral image segmentation for ocean colour remote sensing

Zeng, X., Ren, J., McKee, D., Lavender, S. & Marshall, S., 15 May 2012, p. 86-91. 6 p.

Research output: Contribution to conferencePaper

Remote sensing of seasonal stratification dynamics in the southern Irish Sea

Neil, C., Cunningham, A., McKee, D. & Polton, J. A., Dec 2012, In : Remote Sensing of Environment. 127, p. 288-297 10 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Tidal synchronous orbit: A novel approach to remote sensing of oceanic regions

Lowe, C., Macdonald, M., Greenland, S. C. & McKee, D., 1 Oct 2012, p. IAC-12-B1.2.17 p13924.

Research output: Contribution to conferencePoster

Open Access
File
55 Downloads (Pure)
2011

Effective scattering phase functions for the multiple scattering regime

Piskozub, J. & McKee, D., 28 Feb 2011, In : Optics Express. 19, 5, p. 4786-4794 9 p.

Research output: Contribution to journalArticle

29 Citations (Scopus)

Relationships between suspended mineral concentrations and red-waveband reflectances in moderately turbid shelf seas

Neil, C., Cunningham, A. & McKee, D., 15 Dec 2011, In : Remote Sensing of Environment. 115, 12, p. 3719-3730 12 p.

Research output: Contribution to journalArticle

25 Citations (Scopus)
2009

Role of measurement uncertainties in observed variability in the spectral backscattering ratio: a case study in mineral-rich coastal waters

McKee, D., Chami, M., Brown, I. C., Calzado, V. S., Doxaran, D. & Cunningham, A., 20 Aug 2009, In : Applied Optics. 48, 24, p. 4663-4675 13 p.

Research output: Contribution to journalArticle

48 Citations (Scopus)

Spectral variations of light scattering by marine particles in coastal waters, from the visible to the near infrared

Doxaran, D., Ruddick, K., McKee, D., Gentili, B., Tailliez, D., Chami, M. & Babin, M., Jul 2009, In : Limnology and Oceanography . 54, 4, p. 1257-1271 15 p.

Research output: Contribution to journalArticle

61 Citations (Scopus)
2008

Measuring algal fluorescence from space in optically complex coastal waters

McKee, D. & Cunningham, A., Nov 2008, In : Sea Technology. 49, 11, p. 41-44 3 p.

Research output: Contribution to journalArticle

Scattering error corrections for in situ absorption and attenuation measurements

McKee, D., Piskozub, J. & Brown, I. C., 24 Nov 2008, In : Optics Express. 16, 24, p. 19480-19492 13 p.

Research output: Contribution to journalArticle

Open Access
File
32 Citations (Scopus)
183 Downloads (Pure)
2007

An approach to determining shelf seawater composition by inversion of in situ inherent optical property measurements

Brown, IC., Cunningham, A. & McKee, D., 18 Jun 2007, p. 1-6. 5 p.

Research output: Contribution to conferencePaper

2 Citations (Scopus)
Open Access
File
26 Citations (Scopus)
71 Downloads (Pure)

Determining the impact of non-algal materials on water-leaving solar stimulated fluorescence signals in coastal waters

McKee, D., Cunningham, A., Wright, D. & Hay, L., 2007, New York: IEEE. 6 p. (Oceans 2007 Europe International Conference)

Research output: Book/ReportBook